# ========= [INFO] ==========
# Mut inCB: not accepter mutation in BC
# Mut inMS: 2
# InputBAM: 10-N3-12cycles-IDT.A25.merged.withUMI.group.identity.bam
# seq_deb : GACTTAGTC
# seq_fin : TCTCT
# MS_seq : A
# excl : C,G,T
# nom  : A25
# typeF: IDT
# log file: 10-N3-12cycles-IDT.A25.merged.withUMI.group.identity.A25.seq.log
# =============================
#
#-------------- Filt ------------------
# condiGrep: GACT.AGTCA.+AAA.+A.CTCT|GACT.AGTCA.+AAA.+AT.TCT|GACT.AGTCA.+AAA.+ATC.CT|GACT.AGTCA.+AAA.+ATCT.T|GACT.AGTCA.+AAA.+ATCTC.|GACTT.GTCA.+AAA.+A.CTCT|GACTT.GTCA.+AAA.+AT.TCT|GACTT.GTCA.+AAA.+ATC.CT|GACTT.GTCA.+AAA.+ATCT.T|GACTT.GTCA.+AAA.+ATCTC.|GACTTA.TCA.+AAA.+A.CTCT|GACTTA.TCA.+AAA.+AT.TCT|GACTTA.TCA.+AAA.+ATC.CT|GACTTA.TCA.+AAA.+ATCT.T|GACTTA.TCA.+AAA.+ATCTC.|GACTTAG.CA.+AAA.+A.CTCT|GACTTAG.CA.+AAA.+AT.TCT|GACTTAG.CA.+AAA.+ATC.CT|GACTTAG.CA.+AAA.+ATCT.T|GACTTAG.CA.+AAA.+ATCTC.|GACTTAGT.A.+AAA.+A.CTCT|GACTTAGT.A.+AAA.+AT.TCT|GACTTAGT.A.+AAA.+ATC.CT|GACTTAGT.A.+AAA.+ATCT.T|GACTTAGT.A.+AAA.+ATCTC.
# condiSet1: s/\t.*GACT.AGTCA/\tA/;s/\t.*GACTT.GTCA/\tA/;s/\t.*GACTTA.TCA/\tA/;s/\t.*GACTTAG.CA/\tA/;s/\t.*GACTTAGT.A/\tA/
# condiSet2: s/A.CTCT.*$/A/;s/AT.TCT.*$/A/;s/ATC.CT.*$/A/;s/ATCT.T.*$/A/;s/ATCTC..*$/A/
#--------------------------------------
